Dr Roy Chaudhuri
School of Biosciences
Lecturer in Bioinformatics
    
         r.chaudhuri@sheffield.ac.uk
    
        
+44 114 222 2837
          
        
      
    
  
  
+44 114 222 2837
      Firth Court
  
Full contact details
        Dr Roy Chaudhuri
School of Biosciences
Firth Court
Western Bank
Sheffield
S10 2TN
          
      
  
School of Biosciences
Firth Court
Western Bank
Sheffield
S10 2TN
- Research interests
 - 
    
My research interests are primarily in the area of bacterial genomics.
Current research topics include:
- Comparative genomics and phylogenetics of bacterial pathogens, particularly E. coli and Salmonella
 - Use of transposon insertion sequencing methods (TraDIS/TnSeq/HITS/InSeq) to identify essential bacterial genes and genes important for survival in particular environments such as during infection of a model system
 - Development of user-friendly software tools and online resources for exploring data from -omics technologies. Examples include coliBASE, Xbase and the recently-funded .
 
 
- Publications
 - 
    
Show: Featured publications All publications
Featured publications
Journal articles
- . Infection and Immunity, 84(4), 989-997.
 - . BMC Genomics, 15.
 - . Vet Microbiol, 166(3-4), 558-566.
 - . J Bacteriol, 195(18), 4264-4273.
 - . PLoS Genet, 9(4), e1003456.
 - . Infect Genet Evol, 12(2), 214-226.
 - . Microbiology (Reading), 157(Pt 10), 2922-2932.
 - . Journal of Bacteriology, 193(7), 1771-1776.
 - . J Bacteriol, 192(21), 5822-5831.
 - . PLoS One, 5(1), e8801.
 - . Plos Pathogens, 5(7).
 - . BMC Genomics, 10, 291.
 - . Journal of Bacteriology, 190(20), 6881-6893.
 - . Nucleic Acids Research, 34(1), 1-9.
 - . Nucleic Acids Res, 34(Database issue), D335-D337.
 - . Nature Communications, 6.
 
All publications
Journal articles
- . PLOS Biology, 22(8).
 - . Microbial Genomics, 10(8).
 - . Protein Science, 32(11).
 - . PLOS Pathogens, 19(6).
 - . mSphere, 8(1).
 - . New Phytologist, 236(2), 622-638.
 - . Microbiology, 167(12).
 - . Animal Diseases, 1(1).
 - . Bioinformatics, 37(19), 3387-3387.
 - . Bioinformatics, 37(23), 4343-4349.
 - . PeerJ, 9.
 - . mSphere, 5(4).
 - . PLoS ONE, 15(1).
 - . Microbiology Resource Announcements, 9(1).
 - . Nature Communications, 10(1).
 - . PLOS Pathogens, 15(9).
 - . Microbiology Resource Announcements, 8(30).
 - .
 - . mSystems, 4(4).
 - . Access Microbiology, 1(1A).
 - . PLoS Biology, 17(1).
 - . BMC Genomics, 20.
 - . Infection and Immunity, 86(3).
 - . Journal of Clinical Microbiology, 55(9), 2617-2628.
 - . PLoS ONE, 12(8).
 - . Microbial Genomics, 3.
 - . Frontiers in Microbiology, 8.
 - . Genome Announcements, 4(6).
 - . Veterinary Record, 179(11).
 - . Frontiers in Microbiology, 7:810.
 - . JOURNAL OF BACTERIOLOGY, 198(9), 1393-1400.
 - . The ISME Journal, 10, 2468-2477.
 - . Infection and Immunity, 84(4), 989-997.
 - . Genome Announcements, 4(1), e01667-15-e01667-15.
 - . Proceedings of the National Academy of Sciences, 112(51), 15725-15730.
 - . Journal of Clinical Microbiology, 53(12), 3812-3821.
 - . Frontiers in Microbiology , 6.
 - . Veterinary Microbiology, 179(3-4), 341-341.
 - . Veterinary Microbiology, 178(3-4), 279-282.
 - . Journal of Antimicrobial Chemotherapy, 70(8), 2217-2222.
 - . Molecular Biology and Evolution, 32(4), 888-895.
 - . Heredity, 114(1), 48-55.
 - . BMC Genomics, 15.
 - . Molecular Ecology, 23(21), 5179-5192.
 - . Journal of Clinical Microbiology, 52(7), 2380-2385.
 - . PLoS ONE, 9(6).
 - . PLoS ONE, 9(2).
 - . Veterinary Research, 44(1).
 - . PLOS ONE, 8(11).
 - . Veterinary Research, 44(1).
 - . Vet Microbiol, 166(3-4), 558-566.
 - . J Bacteriol, 195(18), 4264-4273.
 - . PLoS Genet, 9(4), e1003456.
 - . Infection and Immunity, 81(3), 838-849.
 - . Infect Genet Evol, 12(2), 214-226.
 - . Microbiology (Reading), 157(Pt 10), 2922-2932.
 - . Journal of Bacteriology, 193(17), 4540-4540.
 - . Journal of Bacteriology, 193(7), 1771-1776.
 - . EMBO Rep, 12(2), 123-128.
 - . J Bacteriol, 192(21), 5822-5831.
 - . PLoS One, 5(1), e8801.
 - . Plasmid, 63(1), 46-52.
 - . Methods Mol Biol, 465, 419-431.
 - . Plos Pathogens, 5(7).
 - . BMC Genomics, 10, 291.
 - . Journal of Bacteriology, 190(20), 6881-6893.
 - . Nucleic Acids Res, 36(Database issue), D543-D546.
 - . PLoS One, 2(4), e352.
 - . J Clin Microbiol, 44(12), 4528-4536.
 - . Infection and Immunity, 74(10), 5914-5925.
 - . Nucleic Acids Research, 34(1), e3.
 - . Nucleic Acids Research, 34(1), 1-9.
 - . Nucleic Acids Res, 34(Database issue), D335-D337.
 - . Journal of Bacteriology, 187(23), 8164-8171.
 - . Biochim Biophys Acta, 1745(2), 223-253.
 - . J Clin Microbiol, 43(5), 2425-2434.
 - . NUCLEIC ACIDS RESEARCH, 33(1).
 - . Trends Microbiol, 13(4), 143-149.
 - . Infect Immun, 72(12), 7282-7293.
 - . J Bacteriol, 186(11), 3547-3560.
 - coliBASE: An online database for Escherichia coli, Shigella and Salmonella comparative genomics. Nucleic Acids Research, 32(DATABASE ISS.), D296-D299.
 - . Trends Microbiol, 12(11), 476-482.
 - . Nucleic Acids Res, 32(Database issue), D296-D299.
 - . Curr Opin Microbiol, 6(5), 519-527.
 - . Trends Microbiol, 10(12), 556-563.
 - . Philosophical Transactions of the Royal Society B Biological Sciences, 356(1410), 867-876.
 - . Nature Communications, 6.
 - . Nature Communications, 6(1).
 
Book chapters
- , The Molecular Epidemiology of Human Viruses (pp. 65-96). Springer US
 - , Bacterial Pathogenomics (pp. 21-48). ASM Press
 
Preprints
- , Cold Spring Harbor Laboratory.
 - , Cold Spring Harbor Laboratory.
 - , Springer Science and Business Media LLC.
 - , Springer Science and Business Media LLC.
 - , Springer Science and Business Media LLC.
 - , Cold Spring Harbor Laboratory.
 - , Cold Spring Harbor Laboratory.
 - , Cold Spring Harbor Laboratory.
 
 
- Teaching activities
 - 
    
Module Coordinator: MBB344 Genomic Science
Level 3 Modules
MBB339 Evolutionary Genetics
MBB344 Genomic Science
MBB360 Project
MBB363 Genetics Data HandlingLevel 2 Modules
MBB267 Genes, Genomes and Chromosomes
Level 1 Modules
MBB165 Practical Molecular Bioscience 1