Professor Jonathan R Leake
School of Biosciences
Professor of Plant-Soil Interactions
Full contact details
School of Biosciences
C53
Alfred Denny Building
Western Bank
Sheffield
S10 2TN
- Profile
 - 
    
- BSc (1984) University of Bristol
 - PhD (1988) University of Sheffield
 - NERC Postdoctoral Research Assistant, Animal and Plant Sciences, University of Sheffield (1988-1990)
 - Temporary Lecturer, Animal and Plant Sciences, University of Sheffield (1990)
 - Lecturer, Animal and Plant Sciences, University of Sheffield (1990-2003)
 - Senior Lecturer, Animal and Plant Sciences, University of Sheffield (2003-2006)
 - Reader in Plant-Soil interactions, School of Biosciences, University of Sheffield (2007-2012)
 
 
- Research interests
 - 
    
- Regenerative agriculture and soil health - in collaboration with UK farmers, investigating combinations of agricultural management practices that best improve soil health and climate resilience, reduce requirements for expensive inputs, and delivers better yields or margins for farmers. A particular focus is on long-term effects of integrating grass-clover or herbal leys into arable rotations, and subsequent soil health, and crop performance using direct drolling compared to ploughing.
 - Cost-effective monitoring of arable soil health - applying and evaluating the effectiveness of measurement of >2mm water-stable macro-aggregates (Guest et al., 2022) and soil organic C and N in the resulting two soil fractions to quantify soil health and its improvement in arable fields resulting from more sustainable management practices.
 - Sustainable agriculture and horticulture - adding basaltic rock dusts to improve grassland and cropland production and reduce net greenhouse gas emissions, and the use of low-energy input hydroponic horticulture to grow salad crops in unheated polytunnels.
 - Mycorrhizal fungi - their networks of power and influence - from nano-to-global scales - use carbon isotope tracers to quantify energy passing from plants to their symbiotic root-inflecting mycorrhizal fungi and how it is used by these fungi: (i) to drive mineral weathering, (ii) in nutrient and carbon cycling and (iii) to empower interactions with other soil organisms (fungi, plants, and fungal-feeding collembolans).
 - Myco-heterotrophy: plants parasitic on fungi - about 10% of all plant species are myco-heterotrophic for part of their life, including most orchids. Over 400 species are fully myco-heterotrophic (Leake 1994). My interests are in understanding their evolution, adaptive features, life cycles, ecology, physiology, functioning and their critical fungal partners.
 
 
- Publications
 - 
    
Show: Featured publications All publications
Featured publications
Journal articles
- . ISME Journal, 10(6), 1514-1526.
 - . New Phytologist, 205(4), 1492-1502.
 - . New Phytologist, 205(2), 743-756.
 - . Journal of Applied Ecology.
 - . Biology Letters, 10(7).
 - . Sci Total Environ, 472, 444-453.
 - . Biogeosciences, 11(2), 321-331.
 - . Mycologist, 19(3), 113-122.
 - . Curr Opin Plant Biol, 7(4), 422-428.
 - Novel in-growth core system enables functional studies of grassland mycorrhizal mycelial networks. NEW PHYTOL, 152(3), 555-562.
 - THE BIOLOGY OF MYCO-HETEROTROPHIC (SAPROPHYTIC) PLANTS. NEW PHYTOL, 127(2), 171-216.
 
All publications
Journal articles
- . Philosophical Transactions of the Royal Society B: Biological Sciences, 380(1935).
 - . Agriculture, Ecosystems & Environment, 382, 109471-109471.
 - . Science of The Total Environment, 968.
 - .
 - . Environmental Research: Food Systems, 1(2).
 - . Agriculture, Ecosystems & Environment, 367, 108991-108991.
 - . New Phytologist.
 - . Agriculture, Ecosystems & Environment, 365, 108928-108928.
 - . Global Change Biology, 30(1).
 - . The International Journal of Life Cycle Assessment, 29(3), 456-468.
 - . Soil Use and Management, 40(1).
 - . Nature Geoscience, 16(8), 704-709.
 - . Science of The Total Environment, 852.
 - . Frontiers in Plant Science, 13.
 - . Phycology, 2(3), 297-318.
 - . Frontiers of Agricultural Science and Engineering, 0(0), 0-0.
 - . Soil Use and Management, 38(1), 341-354.
 - . Nutrition Bulletin, 46(4), 497-505.
 - . Science of the Total Environment, 789.
 - . Applied Geochemistry, 132.
 - . Soil and Tillage Research, 212.
 - . Proceedings of the National Academy of Sciences, 118(11).
 - . Mycorrhiza, 31(1), 69-83.
 - . Global Change Biology, 26(6), 3658-3676.
 - . Science of The Total Environment, 713.
 - . Nature Plants, 6(4), 349-354.
 - . Scientific Reports, 10(1).
 - . Nature Food, 1, 155-159.
 - . Science of The Total Environment, 705.
 - . Current Biology, 30(3), 421-431.e2.
 - . New Phytologist, 223(2), 908-921.
 - . Science of the Total Environment, 667, 179-190.
 - . Plants, People, Planet, 1(2), 93-97.
 - . Agriculture, Ecosystems and Environment, 273, 1-12.
 - . Geoderma, 334, 113-123.
 - . NATURE PLANTS, 4(6), 392-392.
 - . Nature Plants, 4, 138-147.
 - . Proceedings of the Royal Society B: Biological Sciences, 284(1860).
 - . Scientific Reports, 6, 33708.
 - . Applied Energy, 164, 871-881.
 - . ISME Journal, 10(6), 1514-1526.
 - . Journal of Applied Ecology, 52(5), 1237-1245.
 - . Palaeontology, 58(5), 787-801.
 - . Plant, Cell & Environment, 38(9), 1947-1961.
 - . Proceedings of the Royal Society B: Biological Sciences, 282(1813).
 - . Scientific Reports, 5.
 - . Environmental Science and Technology, 49(14), 8339-8346.
 - . Frontiers in Ecology and the Environment, 13(5), 241-241.
 - . Nature Communications, 6(1), ---.
 - . New Phytologist, 205(4), 1492-1502.
 - . New Phytologist, 205(2), 743-756.
 - . Journal of Applied Ecology.
 - . PLoS One, 9(7), e101872.
 - . Biology Letters, 10(7).
 - . Ecosystems.
 - . Sci Total Environ, 472, 444-453.
 - . Biogeosciences, 11(2), 321-331.
 - . Botany, 92(1), 83-83.
 - .
 - . Geomicrobiology Journal, 30(8), 721-730.
 - . Environmental Pollution, 183, 133-142.
 - . Am J Bot, 100(3), 582-591.
 - Identifying potential sources of variability between vegetation carbon storage estimates for urban areas.. Environmental pollution (Barking, Essex : 1987), 183, 133-142.
 - . Sci Rep, 2, 963.
 - . Plant and Soil, 1-10.
 - . Mol Ecol, 21(20), 4921-4924.
 - . Journal of Geophysical Research Biogeosciences, 117(3).
 - . Biol Lett, 8(6), 1006-1011.
 - . Geobiology, 10(5), 445-456.
 - . Nat Commun, 3, 835.
 - . Philos Trans R Soc Lond B Biol Sci, 367(1588), 565-582.
 - . Journal of Ecology, 100(1), 31-41.
 - . Biogeochemistry, 111(1-3), 411-425.
 - . Geochimica Et Cosmochimica Acta, 75(22), 6870-6881.
 - . Journal of Applied Ecology, 48(5), 1125-1134.
 - . American Journal of Science, 311, 369-403.
 - . Biol Lett, 7(5), 771-774.
 - . Global Change Biology, 17(8), 2615-2628.
 - Recovery of soil nitrogen pools in species-rich grasslands after 12 years of simulated pollutant nitrogen deposition: A 6-year experimental analysis. Global Change Biology.
 - . Geobiology, 9(2), 140-165.
 - Impacts of atmospheric nitrogen deposition: Responses of multiple plant and soil parameters across contrasting ecosystems in long-term field experiments. Global Change Biology.
 - . Proceedings of the Institution of Civil Engineers Urban Design and Planning, 164(2), 121-128.
 - Plant and mycorrhizal driven silicate weathering: Quantifying carbon flux and mineral weathering processes at the laboratory mesocosm scale. Applied Geochemistry.
 - . Nat Commun, 1, 103.
 - Physiological ecology of mycoheterotrophy. NEW PHYTOL, 185(3), 601-605.
 - . Environ Health, 8 Suppl 1(Suppl 1), S6.
 - . GEOLOGY, 37(7), 615-618.
 - . Geobiology, 7(2), 171-191.
 - . New Phytol, 180(4), 864-874.
 - . New Phytol, 180(1), 176-184.
 - . New Phytol, 177(3), 572-576.
 - . MINERALOGICAL MAGAZINE, 72(1), 85-89.
 - . Environ Pollut, 155(2), 336-349.
 - . Comparative Biochemistry and Physiology Part A: Molecular & Integrative Physiology, 146(4), S222-S222.
 - . Ann Bot, 99(5), 831-834.
 - . APPL SOIL ECOL, 33(2), 152-175.
 - . New Phytol, 171(2), 405-416.
 - . Mycologist, 19(3), 113-122.
 - . SCIENCE, 309(5737), 1047-1047.
 - . CAN J BOT, 83(8), 1073-1073.
 - . PLANT SOIL, 271(1-2), 157-164.
 - . Water, Air, & Soil Pollution: Focus, 4(6), 159-167.
 - . Water Air and Soil Pollution Focus, 4(6), 159-167.
 - . Curr Opin Plant Biol, 7(4), 422-428.
 - . NEW PHYTOL, 163(2), 405-423.
 - . NEW PHYTOL, 161(2), 503-515.
 - . NEW PHYTOL, 161(1), 279-289.
 - . Mycorrhiza, 14(1), 37-45.
 - . EUR J SOIL SCI, 54(4), 671-677.
 - Effects of enhanced nitrogen deposition and phosphorus limitation on nitrogen budgets of semi-natural grasslands. GLOBAL CHANGE BIOL, 9(9), 1309-1321.
 - Transfer of recent photosynthate into mycorrhizal mycelium of an upland grassland: short-term respiratory losses and accumulation of C-14. SOIL BIOL BIOCHEM, 34(10), 1521-1524.
 - . NATURE, 419(6905), 389-392.
 - Symbiotic germination and development of the myco-heterotrophic orchid Neottia nidus-avis in nature and its requirement for locally distributed Sebacina spp.. NEW PHYTOL, 154(1), 233-247.
 - In situ (CO2)-C-13 pulse-labelling of upland grassland demonstrates a rapid pathway of carbon flux from arbuscular mycorrhizal mycelia to the soil. NEW PHYTOL, 153(2), 327-334.
 - Novel in-growth core system enables functional studies of grassland mycorrhizal mycelial networks. NEW PHYTOL, 152(3), 555-562.
 - Is diversity of ectomycorrhizal fungi important for ecosystem function?. NEW PHYTOL, 152(1), 1-3.
 - Assimilation and isotopic fractionation of nitrogen by mycorrhizal fungi. NEW PHYTOL, 151(2), 503-511.
 - Assimilation and isotopic fractionation of nitrogen by mycorrhizal and nonmycorrhizal subarctic plants. NEW PHYTOL, 151(2), 513-524.
 - Assessment of Zn mobilization in the rhizosphere of Thlaspi caerulescens by bioassay with non-accumulator plants and soil extraction. PLANT SOIL, 237(1), 147-156.
 - Zinc accumulation by Thlaspi caerulescens from soils with different Zn availability: a pot study. PLANT SOIL, 236(1), 11-18.
 - . Environ Sci Technol, 35(15), 3237-3241.
 - . Tree Physiol, 21(2-3), 71-82.
 - Symbiotic germination and development of myco-heterotrophic plants in nature: transfer of carbon from ectomycorrhizal Salix repens and Betula pendula to the orchid Corallorhiza trifida through shared hyphal connections. NEW PHYTOL, 145(3), 539-548.
 - Positive responses to Zn and Cd by roots of the Zn and Cd hyperaccumulator Thlaspi caerulescens. NEW PHYTOL, 145(2), 199-210.
 - Symbiotic germination and development of myco-heterotrophic plants in nature: ontogeny of Corallorhiza trifida and characterization of its mycorrhizal fungi. NEW PHYTOL, 145(3), 523-537.
 - The effects of quantity and duration of simulated pollutant nitrogen deposition on root-surface phosphatase activities in calcareous and acid grasslands: a bioassay approach. NEW PHYTOL, 141(3), 433-442.
 - Temperature regulation of extracellular proteases in ectomycorrhizal fungi (Hebeloma spp.) grown in axenic culture. MYCOL RES, 103, 707-714.
 - Changes in soil microbial biomass and microbial activities in response to 7 years simulated pollutant nitrogen deposition on a heathland and two grasslands. ENVIRON POLLUT, 103(2-3), 239-250.
 - Phosphodiesters as mycorrhizal P sources .2. Ericoid mycorrhiza and the utilization of nuclei as a phosphorus and nitrogen source by Vaccinium macrocarpon. NEW PHYTOL, 132(3), 445-451.
 - Phosphodiesters as mycorrhizal P sources .1. Phosphodiesterase production and the utilization of DNA as a phosphorus source by the ericoid mycorrhizal fungus Hymenoscyphus ericae. NEW PHYTOL, 132(3), 435-443.
 - THE BIOLOGY OF MYCO-HETEROTROPHIC (SAPROPHYTIC) PLANTS. NEW PHYTOL, 127(2), 171-216.
 - PROTEINASE ACTIVITY IN MYCORRHIZAL FUNGI .3. EFFECTS OF PROTEIN, PROTEIN HYDROLYSATE, GLUCOSE AND AMMONIUM ON PRODUCTION OF EXTRACELLULAR PROTEINASE BY HYMENOSCYPHUS-ERICAE (READ) KORF AND KERNAN. NEW PHYTOL, 117(2), 309-317.
 - EXPERIMENTS WITH ERICOID MYCORRHIZA. METHOD MICROBIOL, 23, 435-459.
 - THE BIOLOGY OF MYCORRHIZA IN THE ERICACEAE .17. THE ROLE OF MYCORRHIZAL INFECTION IN THE REGULATION OF IRON UPTAKE BY ERICACEOUS PLANTS. NEW PHYTOL, 115(2), 251-258.
 - PROTEINASE ACTIVITY IN MYCORRHIZAL FUNGI .2. THE EFFECTS OF MINERAL AND ORGANIC NITROGEN-SOURCES ON INDUCTION OF EXTRACELLULAR PROTEINASE IN HYMENOSCYPHUS-ERICAE (READ) KORF AND KERNAN. NEW PHYTOL, 116(1), 123-128.
 - PROTEINASE ACTIVITY IN MYCORRHIZAL FUNGI .1. THE EFFECT OF EXTRACELLULAR PH ON THE PRODUCTION AND ACTIVITY OF PROTEINASE BY ERICOID ENDOPHYTES FROM SOILS OF CONTRASTED PH. NEW PHYTOL, 115(2), 243-250.
 - THE BIOLOGY OF MYCORRHIZA IN THE ERICACEAE .16. MYCORRHIZA AND IRON UPTAKE IN CALLUNA-VULGARIS (L) HULL IN THE PRESENCE OF 2 CALCIUM SALTS. NEW PHYTOL, 114(4), 651-657.
 - CHITIN AS A NITROGEN-SOURCE FOR MYCORRHIZAL FUNGI. MYCOL RES, 94, 993-995.
 - THE BIOLOGY OF MYCORRHIZA IN THE ERICACEAE .15. THE EFFECT OF MYCORRHIZAL INFECTION ON CALCIUM-UPTAKE BY CALLUNA-VULGARIS (L) HULL. NEW PHYTOL, 113(4), 535-544.
 - THE BIOLOGY OF MYCORRHIZA IN THE ERICACEAE .13. SOME CHARACTERISTICS OF THE EXTRACELLULAR PROTEINASE ACTIVITY OF THE ERICOID ENDOPHYTE HYMENOSCYPHUS-ERICAE. NEW PHYTOL, 112(1), 69-76.
 
Book chapters
- , Mycorrhizal Mediation of Soil (pp. xi-xii). Elsevier
 - , Mycorrhizal Mediation of Soil (pp. 9-33). Elsevier
 - In McHugh N (Ed.), Urban Forests (pp. 37-58). Apple Academic Press
 - , Urban Horticulture Ecology Landscape and Agriculture (pp. 55-78).
 - , Acta medicinae legalis et socialis (pp. 311-317). Imprensa da Universidade de Coimbra
 - , Fungi in the Environment (pp. 161-184). Cambridge University Press
 - , Fungi in Biogeochemical Cycles (pp. 129-150). Cambridge University Press
 - , Methods in Comparative Plant Ecology (pp. 29-222). Springer Netherlands
 
Conference proceedings
- Constraining global-scale weathering models through nano-scale ectomycorrhiza-mineral interactions. GEOCHIMICA ET COSMOCHIMICA ACTA, Vol. 74(12) (pp A123-A123)
 - Paxillus involutus hyphae: Imaging their structure and interaction with mineral surfaces using AFM. GEOCHIMICA ET COSMOCHIMICA ACTA, Vol. 73(13) (pp A1140-A1140)
 - Effects of mineral type and grain size on EM fungal-mineral interactions. GEOCHIMICA ET COSMOCHIMICA ACTA, Vol. 73(13) (pp A315-A315)
 - Hydroxyapatite weathering by pine mycorrhizas-The role of oxalic acid. GEOCHIMICA ET COSMOCHIMICA ACTA, Vol. 73(13) (pp A732-A732)
 - Arbuscular mycorrhiza: Mineral-specific fungal interactions. GEOCHIMICA ET COSMOCHIMICA ACTA, Vol. 73(13) (pp A1065-A1065)
 - Nanoscale imaging of ectomycorrhizal weathering processes on minerals. GEOCHIMICA ET COSMOCHIMICA ACTA, Vol. 73(13) (pp A421-A421)
 - Mineralogy controls oxalic acid release in mycorrhiza weathering. GEOCHIMICA ET COSMOCHIMICA ACTA, Vol. 73(13) (pp A1177-A1177)
 - Mycorrhizal evolution, biological weathering and the long-term carbon cycle. GEOCHIMICA ET COSMOCHIMICA ACTA, Vol. 73(13) (pp A1318-A1318)
 - Modelling the impact of biota and increasing atmospheric CO2 on silicate mineral weathering processes. GEOCHIMICA ET COSMOCHIMICA ACTA, Vol. 73(13) (pp A84-A84)
 - Quantifying chemical weathering at the biotite-mycorrhiza interface. GEOCHIMICA ET COSMOCHIMICA ACTA, Vol. 73(13) (pp A138-A138)
 - . MINERALOGICAL MAGAZINE, Vol. 72(1) (pp 131-134)
 - . MINERALOGICAL MAGAZINE, Vol. 72(1) (pp 115-120)
 - Biologically-mediated weathering of minerals from nanometre scale to environmental systems. GEOCHIMICA ET COSMOCHIMICA ACTA, Vol. 71(15) (pp A125-A125)
 - . CANADIAN JOURNAL OF BOTANY-REVUE CANADIENNE DE BOTANIQUE, Vol. 82(8) (pp 1016-1045)
 - . CANADIAN JOURNAL OF BOTANY-REVUE CANADIENNE DE BOTANIQUE, Vol. 82(8) (pp 1243-1263)
 - THE ROLE OF ERICOID MYCORRHIZAS IN THE ECOLOGY OF ERICACEOUS PLANTS. AGRICULTURE ECOSYSTEMS & ENVIRONMENT, Vol. 29(1-4) (pp 237-250)
 - THE EFFECTS OF PHENOLIC-COMPOUNDS ON NITROGEN MOBILIZATION BY ERICOID MYCORRHIZAL SYSTEMS. AGRICULTURE ECOSYSTEMS & ENVIRONMENT, Vol. 29(1-4) (pp 225-236)
 
Preprints
- , Cold Spring Harbor Laboratory.
 - , Cold Spring Harbor Laboratory.
 
 
- Research group
 - 
    
Research links and collaborations
- Prof. Sir David Read FRS - University of Sheffield, UK
 - Dr. Duncan Cameron - University of Sheffield, UK
 - Prof. David Beerling - University of Sheffield, UK
 - Prof Margaret Bell and Dr Anil Namdeo - University of Newcastle, UK
 - Prof. Kevin Gaston - University of Exeter, UK
 - Prof. Kevin Lomas - University of Loughborough, UK
 - Prof. Mike Burrell - University of Sheffield, UK
 - Prof. Steven Banwart - University of Sheffield, UK
 - Prof. Vala Ragnarsdottir - University of Reykjavik, Iceland
 - Prof. Lianne Benning - University of Leeds, UK
 - Dr Terry McMaster - University of Bristol, UK
 - Dr. Martin I Bidartondo - Imperial College and Kew Gardens, UK
 
Postdoctoral research fellows
- Dr Jill Edmondson - Measurement, Mapping, Modelling, Management (4M): An evidence-based methodology for understanding and shrinking the urban carbon footprint. Quantifying the urban soil and vegetation carbon pools within the city of Leicester (EPSRC SUE2 consortium grant jointly with Prof KJ Gaston).
 
Research students
- Kirsty Elliott
 - Owen Hayman (co-supervised with Professor DJ Beerling)
 - Joseph Llanos (co-supervised with Professor P Warren)
 - Magdalena Matysek (co-supervised with Dr D Childs)
 
Research technicians
- Irene Johnson - Research group technician maintaining laboratory fungal culture collection and coordinating mycorrhizal syntheses and isotope tracer studies. Deputy radiation protection officer. Departmental core funding.
 - Adele Duran - Biologically-Mediated Weathering of Minerals from Nanometre Scale to Environmental Systems. Funding NERC and WUN Weathering Science Consortium.
 - Dr David A Johnson - NERC grant jointly with Dr Gareth Phoenix and Dr Duncan Cameron.
 - Stefanie Tille - Functional and evolutionary significance of symbiotic fungal associations in lower land plants (NERC-funded project with Prof DJ Beerling and Dr DD Cameron).
 
 
- Teaching activities
 - 
    
I am tutor for the Biology with a Year Abroad degrees, and member of the Departmental Teaching Committee. My teaching interests are in interdisciplinary science spanning between biology and the environment with particular focus on biogeochemical cycles of carbon nitrogen and phosphorus, plant-soil interactions, Earth-surface processes driven by plants and microorganisms, biodiversity and ecosystem functioning, human impacts on terrestrial ecosystems and sustainability.
At Level 2 I teach and coordinate (Environmental Interpretation Field Course) which is an interdisciplinary residential field course based at the edge of the Connemara region of Western Ireland. The course involves in-depth study of habitats, landscape-shaping processes and human impacts on natural ecosystems, providing wide-ranging training in methods for field description, sampling, quantification and interpretation of ecosystems and the environment.
At Level 3 I coordinate and teach two modules:
- (Sustainable Agro-Ecosystems) reviews the current threats to sustainable food production and natural ecosystems caused by intensive agriculture and unsustainable exploitation of natural resources. A major focus is on the foundational role of soils in providing the underpinning support to terrestrial ecosystems and agriculture, and the way soils have been abused and damaged by human actions.
 - (Issues in Environmental Science) is a seminar and discussion-group based module that considers human impacts upon the environment and the sustainability of the planet, combining reviews of scientific evidence with public and professional opinions and attitudes.
 
I supervise Level 3 Projects () in a wide range of subjects concerning plant-environment interactions, nutrient cycling and biogeochemistry, and Level 3 Dissertations () in topics relating to symbiosis, food security, sustainability, urban ecology, and agro-ecosystem functioning.
I have supervised Level 4 MBiolSci and MRes students on projects involving plant root adaptations, host genotype variation in mycorrhiza functioning and soil carbon sequestration.
 
- Professional activities and memberships
 - 
    
- Fellow of the Institute of Soil Science (2015-)
 - Vice chair of the Farmer-Scientist Network of the Yorkshire Agricultural Society (2023-2026)
 - Advisor to the Editors of the New Phytologist (1997-present)
 - Editorial board of Mycological Research (1999-2003)
 - A strong track record of external speaking engagements to academics, farmers, land managers, agri-businesses etc